Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  115 bits (289), Expect = 8e-31
 Identities = 74/210 (35%), Positives = 117/210 (55%), Gaps = 9/210 (4%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPVEH--YDSMWARLVDYCPDVKVVHRLDMSTSGLILF 73
           +++ED+ II  NKP+G+    G  V++   +S+ + L   C  +++VHRLD  TSG++L 
Sbjct: 108 ILFEDKQIIVLNKPAGIAVHGGSGVDYGVIESLRS-LRPTCKFLELVHRLDRDTSGVLLI 166

Query: 74  AKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVCFE-EG 132
           AK +     L  Q + +   K+Y A V G  ++++  V  PL        ++ V    EG
Sbjct: 167 AKKRMALRHLHDQLRNKQMQKVYQALVRGQWQEHDRVVKAPLLKITLKSGERIVRVNSEG 226

Query: 133 RDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPE-----AVE 187
           + S TR++V++R ++ ++V   P+TGR+HQ+RVH Q  GHPI  DD Y+  +       +
Sbjct: 227 KPSETRFRVLRRFDEASLVEASPVTGRTHQIRVHCQYQGHPIACDDKYSEQKFDDAMRAK 286

Query: 188 FADRLQLHAAELCFYHPRSHWLRTLFVPCD 217
              RL LHAA+L F HP S    T+  P D
Sbjct: 287 GLQRLFLHAAQLTFTHPESETQMTVQAPLD 316