Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  236 bits (603), Expect = 2e-67
 Identities = 116/201 (57%), Positives = 148/201 (73%), Gaps = 1/201 (0%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           YNPP DPW+D++++D+ II  NKPSGLLSVPGR   H+DS W+R+    P+ +VVHRLDM
Sbjct: 7   YNPPTDPWLDILHQDKDIIVINKPSGLLSVPGRDPIHHDSAWSRIKAEHPNSQVVHRLDM 66

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
           +TSG++++A  K  E  LK+QF+ R THK Y+ARV G ++ N   V+LPL CDWPNRP+Q
Sbjct: 67  ATSGVMVYALRKSAEVELKRQFRDRETHKTYFARVAGHVKAN-CSVDLPLICDWPNRPRQ 125

Query: 126 KVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEA 185
           KV  E G+ SLT   V+   +++T+V+L PITGRSHQLRVHM +LGHPI+GD  YA P A
Sbjct: 126 KVDHEIGKPSLTHVDVISYGKRSTLVKLTPITGRSHQLRVHMMALGHPILGDGFYADPLA 185

Query: 186 VEFADRLQLHAAELCFYHPRS 206
              ADRL LHAA L F HP S
Sbjct: 186 KSLADRLLLHAASLSFTHPYS 206