Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  100 bits (248), Expect = 5e-26
 Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 21/214 (9%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---------VVHRLD 64
           + V+YED+ +I  +K +G++  PG     +  + A L    P +          +VHRLD
Sbjct: 102 LTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSGIGGERRPGIVHRLD 161

Query: 65  MSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPK 124
             TSGL++ AK       L +QF      + Y   VWG      G ++ PL      R K
Sbjct: 162 KDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAAGSIDAPLGRHPTQRKK 221

Query: 125 QKVCFEEGRDSLTRYQVVKREEK-TTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP- 182
             V    G+ +LT Y+VV   E   ++V+    TGR+HQ+RVHM  +GHP++GD +Y   
Sbjct: 222 MAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHMAHIGHPLLGDAVYGHR 281

Query: 183 ----------PEAVEFADRLQLHAAELCFYHPRS 206
                      E +    R  LH+  L F HPR+
Sbjct: 282 NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRT 315