Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Rahnella sp. WP5

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 27/217 (12%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPG---------RPVEHYDSMWARLVDYCPDVKV 59
           P+D  +D++YED  I+  NKP  L+  PG           + HY   +  ++D  P   +
Sbjct: 79  PQDIALDIVYEDTDILVINKPRDLVVHPGAGNPDGTVLNALLHY---YPAIIDV-PRCGI 134

Query: 60  VHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW 119
           VHRLD  T+GL++ AK    ++ L    Q R   + Y A   G M    G VN P+    
Sbjct: 135 VHRLDKDTTGLMVVAKSVPAQTHLVTALQAREITREYEAVAIGTMTAG-GTVNEPIARHS 193

Query: 120 PNRPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDL 179
             R    V    G+ + T Y++++     T +RL   +GR+HQ+RVHM  + HP++GD L
Sbjct: 194 TKRTHMAV-HPTGKPATTHYRIMEHFRAHTRLRLRLESGRTHQIRVHMAHINHPLLGDQL 252

Query: 180 YA-----PPEAVE-------FADRLQLHAAELCFYHP 204
           Y      P  A E         DR  LHA  L  YHP
Sbjct: 253 YGGRPRLPKGASEPFINMLRGFDRQALHATMLRLYHP 289