Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RluA family pseudouridine synthase from Parabacteroides merdae CL09T00C40

 Score =  104 bits (259), Expect = 3e-27
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 29/224 (12%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPD----------VK 58
           P++  I ++YED+ ++  +KP+GL+  PG    +  ++   L  Y  D          + 
Sbjct: 105 PENIPIKIVYEDDDLLVVDKPAGLVVHPGHG-NYTGTLVNALAWYLKDDPTYDPNDPALG 163

Query: 59  VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118
           +VHR+D  TSGL++ AK    ++ L  QF ++ T + Y A VWG++ ++EG +   +  +
Sbjct: 164 LVHRIDKDTSGLLVVAKKPEAKAHLSMQFFHKTTKREYRALVWGIVREDEGRIEGNIGRN 223

Query: 119 WPNRPKQKVCFE--EGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVG 176
             +R +  V  E  +G+ ++T Y V++R    T+V+    TGR+HQ+RVHM+ +GH +  
Sbjct: 224 PRDRMQMTVFPEGDQGKTAVTHYSVLERLGYVTLVKCRLETGRTHQIRVHMKYIGHTLFN 283

Query: 177 DDLYAPPEAV---------EFAD-------RLQLHAAELCFYHP 204
           D+ Y   E +         +F D       R  LHA  L F HP
Sbjct: 284 DERYGGNEILKGTTSSKYKQFVDNCFAICPRQALHAKTLGFVHP 327