Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  101 bits (251), Expect = 2e-26
 Identities = 78/238 (32%), Positives = 115/238 (48%), Gaps = 43/238 (18%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPD-------VK--- 58
           P+D  ++VIYED+ +I  NKP+G++  P  P     ++   L+ +C D       VK   
Sbjct: 80  PEDIPLEVIYEDDDLIVINKPTGMVVHPA-PGTPSGTLVNALLHHCGDNLSGVGGVKRPG 138

Query: 59  VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEG--------- 109
           +VHR+D  TSGL++ AK       L  QF+     + Y A  +GV + N+          
Sbjct: 139 IVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVKGTS 198

Query: 110 -------EVNLPLCCDWPNRPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPI---TGR 159
                  ++   L     +R +Q V F+ GR ++TR ++V       VV LI     TGR
Sbjct: 199 FEPGNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLETGR 258

Query: 160 SHQLRVHMQSLGHPIVGDDLY---------APPE----AVEFADRLQLHAAELCFYHP 204
           +HQ+RVHM   GH +VGD +Y         + PE    A++   R  LHAA L F HP
Sbjct: 259 THQIRVHMAHGGHGLVGDPVYGGKRKLAAKSLPEDTAAAIQAFPRQALHAAVLGFIHP 316