Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

 Score = 95.9 bits (237), Expect = 9e-25
 Identities = 73/217 (33%), Positives = 100/217 (46%), Gaps = 29/217 (13%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGR-PVEHYDSMWARL-VDYCPDVKVVHRLDMSTSGLILF 73
           VIY+D+ +I  NKP+GL    G    +H D + A L  D     ++VHRLD  TSG+++ 
Sbjct: 89  VIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAALQFDAEEKPRLVHRLDKDTSGVLVL 148

Query: 74  AKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPK--------- 124
           A+ +    +L   F++R T KIY+A V GV     GE+   L    P   K         
Sbjct: 149 ARTRLAAQSLTAAFRHRATRKIYWALVAGVPTPYLGEIKCGL-VKAPGHGKSGEGEKMIA 207

Query: 125 ---QKVCFEEG-RDSLTRYQVVKR-EEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDL 179
               +V    G + S T Y  + R   +   V + PITGR+HQLR HM  +GHPI GD  
Sbjct: 208 IHSNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPITGRTHQLRAHMAEIGHPIAGDGK 267

Query: 180 YAPPEAVEFAD------------RLQLHAAELCFYHP 204
           Y         D            +L LH   + F HP
Sbjct: 268 YGGSSQENLGDGWGAQLGGIISKKLHLHCRRMAFEHP 304