Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  106 bits (265), Expect = 5e-28
 Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK------VVHRLDMST 67
           +D++YED+HII  NK +GL+  PG        M A L+ +CP+++      +VHRLD  T
Sbjct: 84  LDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNA-LLHHCPEIELVPRAGIVHRLDKDT 142

Query: 68  SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
           +GL++ AK    ++ L    Q R   + Y A V G M    G V+ P+    P +     
Sbjct: 143 TGLMVVAKTVEAQTHLVAALQAREITREYEAIVSGTMTAG-GVVDEPIARH-PTKRTHMA 200

Query: 128 CFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA----PP 183
               GR S+T Y+V ++    T +RL   TGR+HQ+RVHM  +GH +VGD +Y     PP
Sbjct: 201 VHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMAHIGHILVGDPVYGGRPRPP 260

Query: 184 --------EAVEFADRLQLHAAELCFYHP 204
                   EA+    R  LHA  L   HP
Sbjct: 261 KKATPELMEALNGFKRQALHAVRLELAHP 289