Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 3e-25
 Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 41/225 (18%)

Query: 12  PWIDVIYEDEHIIAANKPSGLL---SVPGRPVEHYDSMWARLVDYCPDVKVVHRLDMSTS 68
           P I+++YED+ ++A +KP+GLL   S   R  +++     R +  C  V  VHRLD  TS
Sbjct: 21  PTIEILYEDDDLVAIHKPAGLLVHRSYLARREKYFAMQMTRDLVGC-HVFPVHRLDRPTS 79

Query: 69  GLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW--------- 119
           G++LFAK   M + L +QF  +   K Y A V G M +  G ++ PL  +          
Sbjct: 80  GVLLFAKSSEMANQLCEQFASKSVQKHYVALVRGNMHE-PGLLDYPLKQELDELGDKNVD 138

Query: 120 PNRPKQ------------KVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHM 167
           PN+  Q            ++ +  GR + +RY          +V+L P TGR HQLR HM
Sbjct: 139 PNKAAQEAQTSYHPLLNCEIPYPSGRYASSRY---------ALVQLTPHTGRKHQLRRHM 189

Query: 168 QSLGHPIVGDDLYAPPEAVEF------ADRLQLHAAELCFYHPRS 206
             L HPI+GD  +   +   F       +RL L A +L F HPRS
Sbjct: 190 AHLRHPIIGDTTHGDGKQNRFMREHSGINRLWLIAKKLEFNHPRS 234