Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  160 bits (406), Expect = 4e-44
 Identities = 95/206 (46%), Positives = 123/206 (59%), Gaps = 13/206 (6%)

Query: 7   NPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRL 63
           NP +   + +IY+DE I   NKP+  LSVPG+ V   DS+++R+    P      +VHRL
Sbjct: 368 NPAEGKDLSIIYQDEAIAVVNKPAEFLSVPGKHVT--DSVYSRMRQAFPKATGPLIVHRL 425

Query: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRP 123
           DMSTSGL++ A      +AL +QF  R   K Y ARV G ++  EGE+ LPL  D  +RP
Sbjct: 426 DMSTSGLMVIALSSEANTALVQQFIGRTVEKRYLARVAGEVQGEEGEITLPLRVDLDDRP 485

Query: 124 KQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRV---HMQSLGHPIVGDDLY 180
           +Q VCFE G+ + T + V  R E TT++ L P TGR+HQLRV   H   LG PI+GDDLY
Sbjct: 486 RQLVCFEHGKHAHTYWLVKSRGEGTTLLSLFPKTGRTHQLRVHCAHQDGLGMPIIGDDLY 545

Query: 181 APPEAVEFADRLQLHAAELCFYHPRS 206
                   A+RL LHA  L F HP S
Sbjct: 546 GAK-----ANRLHLHAQYLAFNHPIS 566