Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (272), Expect = 8e-29
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRLDMSTSGLIL 72
           +++ED+ II  NKP+G+    G  V+    +   +    P  K   +VHRLD  TSG++L
Sbjct: 108 ILFEDKAIIVLNKPAGIAVHGGSGVDF--GVIEAMRSLRPQQKFLELVHRLDKETSGVLL 165

Query: 73  FAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVCF-EE 131
            AK +     L  Q +Y+   K Y A V G  + ++  +N PL        ++ V   +E
Sbjct: 166 IAKKRRALKHLHDQLRYKKMQKDYMALVRGEWQNHDKVINAPLLKLTLKSGERIVRVNQE 225

Query: 132 GRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAVEF--- 188
           G+ S TR+++++R +  T+V+  P+TGR+HQ+RVH Q  GHPI  D+ Y+  +  +    
Sbjct: 226 GKPSETRFKIMQRYQGATLVQASPVTGRTHQIRVHCQYAGHPIACDEKYSEQKFDDAMRE 285

Query: 189 --ADRLQLHAAELCFYHPRSHWLRTLFVPCDFYPEAEEQILQHFD 231
              +RL LHAA+L F HP S  +  +  P D   +A + +L   D
Sbjct: 286 LGLNRLFLHAAQLKFTHPVSEEVMQVKAPLD---KALQDLLNKLD 327