Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  188 bits (478), Expect = 7e-53
 Identities = 96/204 (47%), Positives = 130/204 (63%), Gaps = 1/204 (0%)

Query: 1   MAMTEYNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV 60
           M +  Y PP  PW+D+ Y+D  II  NKPSGLLS PGR  E +D    RL+   P+  +V
Sbjct: 1   MKIFSYQPPAIPWLDIRYQDRDIIIINKPSGLLSNPGRAAETHDCAINRLLQRFPEAILV 60

Query: 61  HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWP 120
           HRLD +TSG+++FA  K  ES LK QFQ R T K Y A V G+M Q+ G++ L +  D  
Sbjct: 61  HRLDCATSGIMVFALNKKAESHLKTQFQNRTTEKYYVAEVEGLMAQDSGKIELAMKPDSE 120

Query: 121 NRPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLY 180
             P QK+  E+G+ + T ++V++R   +T+V+L PITGR+HQLR+HM++LGH I+GDD Y
Sbjct: 121 QPPLQKIA-EDGKPATTYFEVLERRSNSTLVKLKPITGRTHQLRLHMKALGHTILGDDFY 179

Query: 181 APPEAVEFADRLQLHAAELCFYHP 204
                +  A RL LHA  L   HP
Sbjct: 180 GDEAIIAAAPRLHLHAEHLSITHP 203