Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  238 bits (608), Expect = 6e-68
 Identities = 114/220 (51%), Positives = 154/220 (70%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           Y PP +PW+++++ED+ I+  NKPSGLLSVPGR   +YDS++ R++   P+ ++VHRLDM
Sbjct: 6   YAPPTEPWLEILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYTRVLRDHPNAQIVHRLDM 65

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
           +TSG+I+ A  +  E  LK+QF+ R THKIYYARV G ++  +G V+ PL CDWPNRPKQ
Sbjct: 66  ATSGIIVVALRRSAERELKRQFRDRETHKIYYARVAGHLKAEQGSVDYPLICDWPNRPKQ 125

Query: 126 KVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEA 185
           KV  + G+ S T ++V+ R +++T+V+L PITGRSHQLRVHM ++GHPI+GD+ YA P A
Sbjct: 126 KVDHQIGKASKTLFEVISRAKRSTLVKLTPITGRSHQLRVHMMAIGHPILGDNFYADPLA 185

Query: 186 VEFADRLQLHAAELCFYHPRSHWLRTLFVPCDFYPEAEEQ 225
              A RL LHA  L   HP S    T   P  F    EEQ
Sbjct: 186 KRLAPRLLLHAQSLSLTHPYSKQPMTFSTPIPFTDVTEEQ 225