Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 64/203 (31%), Positives = 110/203 (54%), Gaps = 13/203 (6%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPV-----EHYDSMWARLVDYCPDVKVVHRL 63
           P++  +++IYED+ ++  +KP  ++  P + V      +  S   ++ +    ++ V+RL
Sbjct: 77  PENLALNIIYEDDDLLIVDKPKNMVVHPTKNVLSKTLANAVSNHQKINNQNYKIRFVNRL 136

Query: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEG--EVNLPLCCDWPN 121
           DM T+GL++ AK  +    L KQ    +  KIY A V G ++  EG  E ++ L  D   
Sbjct: 137 DMDTTGLLIIAKDPYSHQRLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLNDDGIK 196

Query: 122 RPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA 181
           R    V    G+ S T+Y+V++  +  +++ +  +TGR+HQ+RVH+ S G+ I+GD LY 
Sbjct: 197 RELSNV----GKISKTKYKVIEELKNASILEIKLLTGRTHQIRVHLSSTGNYIIGDTLYG 252

Query: 182 PPEAVEFADRLQLHAAELCFYHP 204
             E     +R  LH+  L F HP
Sbjct: 253 --EISNLIERQALHSYILRFIHP 273