Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., pseudouridine synthase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  191 bits (485), Expect = 1e-53
 Identities = 102/199 (51%), Positives = 130/199 (65%), Gaps = 2/199 (1%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           Y PP++P + +++ED H++   KPSGLLSVPGR  E  D + +R+    PD  +VHRLD 
Sbjct: 9   YAPPQEP-LRLVHEDAHLLLVEKPSGLLSVPGRGPELADCLLSRVQGAFPDALLVHRLDR 67

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
            TSGL++FA   H +  L  QF+ R   K Y ARVWG + +  G V+LPL  DWPNRP Q
Sbjct: 68  DTSGLMVFALTAHAQRHLGLQFEKRQIKKSYVARVWGQVAEATGTVDLPLIVDWPNRPLQ 127

Query: 126 KVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEA 185
           KV  E G+ ++T ++V+KR E  T VRL P TGRSHQLRVHMQ+LGHPI+GD  YA   A
Sbjct: 128 KVDPETGKAAVTDWRVLKRSEAETRVRLFPKTGRSHQLRVHMQALGHPILGDPFYAEGAA 187

Query: 186 VEFADRLQLHAAELCFYHP 204
             F  RL LH+  L   HP
Sbjct: 188 RAF-PRLMLHSESLRLRHP 205