Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., pseudouridine synthase, RluA family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  104 bits (259), Expect = 3e-27
 Identities = 79/222 (35%), Positives = 102/222 (45%), Gaps = 39/222 (17%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPVE-HYDSMWARL---VDYCPDVKVVHRLDMSTSGLI 71
           VIY D  I+A NKP+GL    G   E H D M   L   +D  P  ++VHRLD  TSG++
Sbjct: 94  VIYRDADILALNKPAGLPVQGGSGQERHIDGMAEALQFELDEPP--RLVHRLDKDTSGVL 151

Query: 72  LFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPL---------------- 115
           L A+ +   +AL   F+ R T KIY+A V GV +   G V   L                
Sbjct: 152 LMARTRRSAAALTAAFRARQTRKIYWAAVAGVPQPQLGTVRYALMKAPGHGKRGEGEKML 211

Query: 116 CCDWPNRPKQKVCFEEGRDSLTRYQVVKR-EEKTTVVRLIPITGRSHQLRVHMQSLGHPI 174
           C D    P+Q     + + + T Y V+     +     L+PITGR+HQLR HM  LGHPI
Sbjct: 212 CID----PRQMDAHPDAKRATTDYAVLSALGRRVAWCVLVPITGRTHQLRAHMAELGHPI 267

Query: 175 VGDDLYAPPEAVEFAD------------RLQLHAAELCFYHP 204
           +GD  Y         D            +L LHA  L   HP
Sbjct: 268 IGDGKYGGSGQENLGDGWGAQLGGEMSKKLHLHARHLSLTHP 309