Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., ribosomal large subunit pseudouridine synthase C from Caulobacter crescentus NA1000

 Score =  103 bits (258), Expect = 3e-27
 Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 16  VIYEDEHIIAANKPSGLLSVPG-RPVEHYDSMWARLVDYCPDVKVVHRLDMSTSGLILFA 74
           V+YEDE ++A NKP+GL    G +  +H D + +   +     ++VHRLD  TSG++L  
Sbjct: 93  VLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRPRLVHRLDRDTSGVLLLG 152

Query: 75  KGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW--------PNRPKQK 126
           K     + L   F  R   K Y+A V G     EG + L L            P +PK  
Sbjct: 153 KTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKRGVGDRELVVPAQPKDP 212

Query: 127 VCFEEGRDSLTRYQVVKRE-EKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEA 185
               + + + T +  + R   + T + L P TGR+HQLR HM+++GHPI+GD  Y   ++
Sbjct: 213 ----DAQPAETEFVTISRAGPRVTWMALRPHTGRTHQLRAHMKAMGHPILGDPKYGDEKS 268

Query: 186 VEFAD--RLQLHAAELCFYHPRSHWLRTLFVPCDFYPEAEE 224
              ++  +LQLHA  +   HP +  L    +     PE +E
Sbjct: 269 APLSEGLKLQLHARSILLPHPSAGMLH---IEAPLSPEMKE 306