Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., ribosomal large subunit pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  144 bits (363), Expect = 4e-39
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 16/201 (7%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRLDMSTSGL 70
           +++++EDE ++  NKPSG+LSVPG+  E  DS++ R+    P+     +VHRLDM+TSGL
Sbjct: 341 LEIVFEDEWLVVVNKPSGMLSVPGKE-EETDSVYHRVKAKYPEATGPMIVHRLDMATSGL 399

Query: 71  ILFAKGKHMESALKKQFQYRLTHKIYYARVW--GVMEQNE--GEVNLPLCCDWPNRPKQK 126
           +L AK K +   L++QF  R   K Y A +   G+ +Q E  G +NLPLC +  +RP+Q 
Sbjct: 400 LLVAKTKEVHQHLQEQFISRSIKKRYVALLDRNGLNQQLEETGTINLPLCLNPLDRPRQM 459

Query: 127 VCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHM---QSLGHPIVGDDLYAPP 183
           V  E G+ ++T Y+++   +K   +   P+TGR+HQLRVH    Q L +PI+GD+LY   
Sbjct: 460 VSEEYGKPAVTEYRILNYSDKYIRIAFYPLTGRTHQLRVHAAHHQGLNYPILGDELYG-- 517

Query: 184 EAVEFADRLQLHAAELCFYHP 204
              + ADRL LHA  + F HP
Sbjct: 518 ---KKADRLYLHAEYIEFRHP 535