Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  106 bits (264), Expect = 7e-28
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 27/223 (12%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWAR------LVDYC---PDVKV 59
           P++  ++++YED +++  NKP+GL+  PG    H   + A       + +Y    P V +
Sbjct: 102 PENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDIPEYDANDPHVGL 161

Query: 60  VHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW 119
           VHR+D  TSGL++ AK    ++ L  QF  + T + Y A VWG +EQ+EG +   +  + 
Sbjct: 162 VHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGSIARNP 221

Query: 120 PNRPKQKVCFEE--GRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGD 177
            +R +  V  +   G+ ++T Y+V++R    T+V  I  TGR+HQ+RVHM+ +GH +  D
Sbjct: 222 KDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFND 281

Query: 178 DLYAPPEAV----------------EFADRLQLHAAELCFYHP 204
           + Y   E +                +   R  LHA  L F HP
Sbjct: 282 ERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHP 324