Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., RNA pseudouridylate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  114 bits (285), Expect = 2e-30
 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 16/201 (7%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPD------VKVVHRLDMST 67
           + ++YED +II   K  GLLSV     +   + +  L +Y         V +VHRLD  T
Sbjct: 89  LKIVYEDAYIIVVEKMQGLLSV-NTERQKERTAYTILNEYVQRSGRQHRVFIVHRLDRDT 147

Query: 68  SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
           SGL++FAK +  +  L+  +   +T + Y A V G ME++   V       W       V
Sbjct: 148 SGLMMFAKDEKTQRTLRDNWHEIVTDRRYVAVVEGTMEKDYDTV-----VSWLTDKTLYV 202

Query: 128 CFEE----GRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPP 183
              +    G  S+T Y+ +KR    +++ L   TGR +Q+RVHMQ LGHPI+GD  Y   
Sbjct: 203 SSSDYDDGGSKSITHYKTIKRANGYSLLELDLETGRKNQIRVHMQDLGHPIIGDGRYGGE 262

Query: 184 EAVEFADRLQLHAAELCFYHP 204
           E++    RL LHA +LCFYHP
Sbjct: 263 ESLNPIGRLALHAFKLCFYHP 283