Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK------VVHRLDMST 67
           +D++YED+ I+  NK +GL+  PG        M A L+ +CP+++      +VHRLD  T
Sbjct: 84  LDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNA-LLHHCPNIEHVPRAGIVHRLDKDT 142

Query: 68  SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
           +GL++ AK    ++ L    Q R   + Y A V G M    G V+ P+    P +     
Sbjct: 143 TGLMVVAKTVEAQTHLVAALQAREITREYEAIVLGTMTAG-GTVDEPIGRH-PTKRTHMA 200

Query: 128 CFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA----PP 183
               G+ ++T Y+V ++    T +RL   +GR+HQ+RVHM  +GH +VGD +Y     PP
Sbjct: 201 VHHSGKPAVTHYRVAEKFRNHTRLRLRLESGRTHQIRVHMAYIGHVLVGDPVYGGRPKPP 260

Query: 184 EAV--EFAD------RLQLHAAELCFYHP 204
           +A   EF +      R  LHA  L   HP
Sbjct: 261 KAASPEFFEILKNFKRQALHAVRLELAHP 289