Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  109 bits (273), Expect = 6e-29
 Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 11/211 (5%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRLDMSTSGLIL 72
           +++ED H+I  NKP+G+    G  V++   +   L    P  K   +VHRLD  TSG++L
Sbjct: 108 ILHEDNHLIVLNKPAGIAVHGGSGVDY--GVIEALRSLRPQQKFLELVHRLDKDTSGVLL 165

Query: 73  FAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVCFE-E 131
            AK +     +  Q +Y+   K Y A V G     +  V  PL        ++ V    E
Sbjct: 166 VAKKRSALKHMHDQLRYKKMQKDYLALVKGEWSAQDKVVKQPLLKLTLKSGERIVRVNAE 225

Query: 132 GRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAVEF--- 188
           G+ S TR+++V+R +  T+V+  P+TGR+HQ+RVH Q +GHPI  D+ Y+     +    
Sbjct: 226 GKPSETRFKIVQRYQGCTLVQASPVTGRTHQIRVHCQYMGHPIACDEKYSEQAFDDSMRA 285

Query: 189 --ADRLQLHAAELCFYHPRSHWLRTLFVPCD 217
               RL LHAAEL F HP +  +  +  P D
Sbjct: 286 LGLTRLFLHAAELMFIHPENDEVMRVSAPLD 316