Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., pseudouridine synthase (RefSeq) from Shewanella sp. ANA-3

 Score =  182 bits (461), Expect = 6e-51
 Identities = 95/209 (45%), Positives = 129/209 (61%), Gaps = 3/209 (1%)

Query: 1   MAMTEYNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV 60
           M + +Y PP  PW+D+ Y+D  +I  NKPSGLLS PGR    +D    RL    PD  +V
Sbjct: 1   MQIFDYQPPSVPWLDLRYQDRDLIIINKPSGLLSNPGRAAHTFDCALTRLQRLYPDTILV 60

Query: 61  HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWP 120
           HRLD +TSG+++FA+ K  ES LK QFQ R   K+Y A V G + ++ G ++L +  D  
Sbjct: 61  HRLDCATSGIMVFARNKKAESQLKTQFQDRQNEKVYIAEVMGGIAKDAGIIDLAIAPDPE 120

Query: 121 NRPKQKV---CFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGD 177
           + P QK         + +LT Y+V++R E +T+V L P TGR+HQLRVHM +LGHPI+GD
Sbjct: 121 HPPYQKTQTPGTAGAKSALTHYRVLERRENSTLVELTPQTGRTHQLRVHMLALGHPILGD 180

Query: 178 DLYAPPEAVEFADRLQLHAAELCFYHPRS 206
           + Y   E ++   RL LHA  L F HP S
Sbjct: 181 EFYGDDEVIKARPRLCLHAQSLRFTHPYS 209