Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., ribosomal large subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  233 bits (594), Expect = 2e-66
 Identities = 119/220 (54%), Positives = 149/220 (67%), Gaps = 1/220 (0%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           Y PP  PW+DV+Y+D+ II  NKPSGLLSVPGR   HYDS++AR+    P  ++VHRLDM
Sbjct: 6   YQPPTTPWLDVLYQDKDIIVVNKPSGLLSVPGRDPAHYDSVYARVKAEHPHCQIVHRLDM 65

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
           +TSG+I+ A  +  E  LK+QF  R T K Y ARV G ++   G V+ PL CDWPNRPKQ
Sbjct: 66  ATSGVIVVALIRSAERELKRQFHDRETSKTYLARVAGHVKNTTGSVDYPLICDWPNRPKQ 125

Query: 126 KVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEA 185
           KV  E G+ SLT ++V+ R +++T+V+L PITGRSHQLRVHM +LGHPI+GD  YA P A
Sbjct: 126 KVDHEIGKPSLTHFEVLSRAKRSTLVKLKPITGRSHQLRVHMMALGHPILGDGFYADPLA 185

Query: 186 VEFADRLQLHAAELCFYHPRSHWLRTLFVPCDF-YPEAEE 224
              A RL LHAAEL   HP +    T      F  PE E+
Sbjct: 186 KSLAPRLLLHAAELTIKHPYTGESMTFSANASFCEPEGEQ 225