Pairwise Alignments

Query, 953 a.a., valine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., valyl-tRNA synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  643 bits (1659), Expect = 0.0
 Identities = 381/958 (39%), Positives = 533/958 (55%), Gaps = 97/958 (10%)

Query: 5   YNPTSIEQDLYKTWEEQGYFKPHGDTSKDAYSIMIPPPNVTGSLHMGHAFQDTIMDTLIR 64
           YNP  +E   Y+ W E   F    D  ++ Y+I+IPPPNVTG LHMGH   +TI D L+R
Sbjct: 7   YNPADVEGKWYQYWLEHRLFSSKPD-GREPYTIVIPPPNVTGVLHMGHMLNNTIQDILVR 65

Query: 65  CQRMKGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTKHDYGRDAFIDKIWEWKAESGGT 124
             RM+GKN  W  GTDHA IAT+  V  K+AA+ G  K D  RD F+   W+W  E GG 
Sbjct: 66  RARMEGKNACWVPGTDHASIATEAKVVNKLAAQ-GIKKTDLTRDEFLKHAWDWTEEHGGI 124

Query: 125 ITKQLRRLGASVDWDRERFTMDDGFYKAVQEVFVRLYKDDLIYRGKRLVNWDPKLHTAIS 184
           I KQLR+LGAS DWDR  FTMD+   K+V +VFV LY   LIYRG R+VNWDPK  TA+S
Sbjct: 125 ILKQLRKLGASCDWDRTAFTMDEERSKSVLKVFVDLYNKGLIYRGVRMVNWDPKALTALS 184

Query: 185 DLEVENKETKGHMWHFRYPLADGVKTADGKDYIVVATTRPETMLGDTGVAVNPEDPRYKD 244
           D EV  KE  G +++ RY +       +G+ Y VVATTRPET++GDT + +NP DP+   
Sbjct: 185 DEEVIYKEEHGKLFYLRYKVEGD---PEGR-YAVVATTRPETIMGDTAMCINPNDPKNAW 240

Query: 245 LIGKEIILPIVGRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHQLPMINILTFD 304
           L GK++I+P+V R IP++ D++ D+E GTGC+K+TPAHD NDY +G+++ LP I+I    
Sbjct: 241 LKGKKVIVPLVNRVIPVIEDDYVDIEFGTGCLKVTPAHDVNDYMLGEKYNLPSIDI---- 296

Query: 305 ANIRDAAEVFNSNGEASNAYGTEIPAKYQGMERFAARKAIVAEFEELGLLQEIKDHDLTV 364
                    FN NG  S A G      Y GM+RF  RK I  + +  GLL++ + +   V
Sbjct: 297 ---------FNDNGTLSEAAGL-----YIGMDRFDVRKQIEKDLDAAGLLEKTEAYTNKV 342

Query: 365 PYGDRGGVVIEPMLTDQWYVRAGILAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWC 424
            Y +R  VVIEP L+ QW+++    A  A+  V N +++F P +Y+N Y  WM +I+DWC
Sbjct: 343 GYSERTNVVIEPKLSMQWFLKMQHFADMALPPVMNDELKFYPAKYKNTYRHWMENIKDWC 402

Query: 425 ISRQLWWGHRIPAWYDEQGNVFVGRNEEEVRAE-----NNIAADV-ALRQDDDVLDTWFS 478
           ISRQLWWGHRIPA++  +G   V    EE  A+      N A  +  LRQD+D LDTWFS
Sbjct: 403 ISRQLWWGHRIPAYFLPEGGYVVAATPEEALAKAKEKTGNAALTMDDLRQDEDCLDTWFS 462

Query: 479 SALW---TFGTLGWPEKTPELKVFHPTDVLVTGFDIIFFWVARMIMMTMHFCKDEDGKAQ 535
           S LW    F  +  P    E+  ++PT  LVTG DIIFFWVARMIM+   +      + +
Sbjct: 463 SWLWPISLFDGINHP-GNEEISYYYPTSDLVTGPDIIFFWVARMIMVGYEY------EGK 515

Query: 536 VPFKTVYVTGLIRDENGDKMSKSKGNVLDPIDMIDGIDLESLVAKRTGNMMQPQLAAKIE 595
           +PFK VY TG++RD+ G KMSKS GN  DP+++ID                         
Sbjct: 516 MPFKNVYFTGIVRDKLGRKMSKSLGNSPDPLELID------------------------- 550

Query: 596 KNTRKTFENGIEAYGTDSLRFTLAAMASTGRDINWDMKRLEGYRNFCNKLWNASRYVLMN 655
                        YG D +R  +   A  G DI +D    E  RNFC+K+WNA R +   
Sbjct: 551 ------------KYGADGVRMGMMLAAPAGNDILFDDALCEQGRNFCSKIWNAFRLIKGW 598

Query: 656 TEEQDCGFAAGAELEYSLADKWIESQFELAAKEFNGHIDNFRLDMAANTLYEFIWNQFCD 715
           T + +   +  A+    LA  W ES+    A E       +RL  A   +Y+  W++F  
Sbjct: 599 TVDDNIQASDAAK----LAVHWFESKQNEVAAEVADLFSKYRLSEALMAVYKLFWDEFSS 654

Query: 716 WYLELTKPVLWKGTEAQQRATRRTLITVLEKTLRLAHPVIPYITETIWQSVKPLVDGVEG 775
           WYLE+ KP   +G +   R T    +  L+  L L HP +P+ITE +WQ +    +  EG
Sbjct: 655 WYLEMIKPAYGQGID---RTTYSATLCFLDNLLHLLHPFMPFITEELWQQMYER-NAEEG 710

Query: 776 DTIMLQALPQYDVANFNQEALDDIEWVKAFITSIRNLRAEYDINPGKPLEVMLKAANEQD 835
           +++M+ AL        +   +   E VK  I++IR++R + +I   +PL+  L+   E  
Sbjct: 711 ESLMVSALSMDTYV--DTAFVAQFEVVKGVISNIRSIRLQKNIAQKEPLD--LQVLGENP 766

Query: 836 AARIEANKPVLVSLAKLESIRVLADGEATPACATALVGKSELMIPMAGLIDKDAELDRLA 895
            A   A   V+  +  L SI V+         ++ +VG +E  +P+  +ID +AE+ R+ 
Sbjct: 767 VAEFNA---VIQKMCNLSSITVVE--SKAEGASSFMVGTTEYAVPLGNMIDVEAEIARME 821

Query: 896 KEIAKTQGEIARIEGKLGNEGFVAKAPEAVITKEREKLAGYQEALVKLEQQKATIAAL 953
            E+   +G +  +  KL NE F+  AP AV+  ER+K A  +  +  L   K +IAAL
Sbjct: 822 AELKHKEGFLQGVLKKLSNEKFINNAPAAVLEMERKKQADAESIISSL---KESIAAL 876