Pairwise Alignments

Query, 953 a.a., valine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 1162 a.a., isoleucyl-tRNA synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  150 bits (378), Expect = 6e-40
 Identities = 210/1036 (20%), Positives = 381/1036 (36%), Gaps = 237/1036 (22%)

Query: 5   YNPTSIEQDLYKTWEEQGYFKPHGDTSKD---AYSIMIPPPNVTGSLHMGHAFQDTIMDT 61
           ++ + + +D+ K W+E   F     T +D   ++     PP+  G   + H    TI D 
Sbjct: 11  FDLSQVNKDVLKKWDENQVFAK-SMTERDGCPSFVFFEGPPSANGMPGIHHVMARTIKDI 69

Query: 62  LIRCQRMKGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTKHDYGRDAFIDKIWEWKAES 121
             R + MKG     + G D  G+  ++ VE+ +    G TK D G+      + ++ A  
Sbjct: 70  FCRYKTMKGYQVKRKAGWDTHGLPVELSVEKAL----GITKEDIGKKI---SVADYNAAC 122

Query: 122 GGTITKQLR-------RLGASVDWDRERFTMDDGFYKAVQEVFVRLYKDDLIYRGKRLVN 174
              + K  +       ++G  VD      T D+ + + +  +  +L+K  L+Y+G  +  
Sbjct: 123 RKDVMKYTKEWEDLTHQMGYWVDMKHPYITYDNRYIETLWWLLKQLHKKGLLYKGYTIQP 182

Query: 175 WDP--------------------KLHTAISDLEVENKETKGHMWHFRYPLA--------- 205
           + P                    K  TA++  +++N + +   W   Y LA         
Sbjct: 183 YSPAAGTGLSSHELNQPGCYRDVKDTTAVAQFKMKNPKPEMAEWGTPYFLAWTTTPWTLP 242

Query: 206 -----------DGVKTADGKDY------IVVATTRPETMLGDTGVAVNPEDPR------- 241
                      D V       Y      +V+A     T        +  ED +       
Sbjct: 243 SNTALCVGPKIDYVAVQTYNAYTGEPITVVLAKALLNTHFNSKAADLKLEDYKAGDKLVP 302

Query: 242 ------YK--DLIGKEI--ILPIV--------------GRRIPIVGDEHADMEKGTGCVK 277
                 YK  DLIG E   ++P V              G+   ++  ++   E GTG V 
Sbjct: 303 FKVVAEYKGADLIGMEYEQLIPWVKPVEVSEDGTWKVSGKGFRVIPGDYVTTEDGTGIVH 362

Query: 278 ITPAHDFNDYEVGKRHQLPMINILTFDANIRDAAEV---FNSNGEASNAYGTEIP----- 329
           I P    +D  V +   +P + ++      R   ++   F    E    +  E       
Sbjct: 363 IAPTFGADDANVARAAGIPSLFMINKKGETRPMVDLTGKFYMLDELDENFVKECVDVDKY 422

Query: 330 AKYQGM-------------ERFAARKAIVAEFEELGLLQ---------EIKDHDLTVPYG 367
            +YQG               ++  + A  AE  ++ L           +I+ H    P+ 
Sbjct: 423 KEYQGAWVKNAYNPVFMVDGKYDEKAAQAAESLDVALCMMMKANNQAFKIEKHIHNYPHC 482

Query: 368 DRGGVVIEPMLTDQWYVRAGILAKPAVEAVENGDIQFVPKQYENMYFS-WMRDIQDWCIS 426
            R    +     D W++R+    +  +E   N  I + P+      F  W+ ++ DW +S
Sbjct: 483 WRTDKPVLYYPLDSWFIRSTACKERMMEL--NKTINWKPESTGTGRFGKWLENLNDWNLS 540

Query: 427 RQLWWGHRIPAWYDEQGNVFVG-RNEEEV--RAENNIAA--------------------- 462
           R  +WG  +P W  E G   +   + EE+    E ++AA                     
Sbjct: 541 RSRYWGTPLPIWRTEDGTSEICIESVEELYNEIEKSVAAGFMKSNPYKDKGFVPGEYTEG 600

Query: 463 -------------DVALRQDD--------DVLDTWFSSALWTFGTLGWPEKTPEL---KV 498
                        D+ L  +D        D++D WF S    +  + +P +   +   + 
Sbjct: 601 NYDKIDLHRPYVDDIILVSEDGQPMKRESDLIDVWFDSGAMPYAQIHYPFENKNILDNRE 660

Query: 499 FHPTDVLVTGFDIIFFWVARM-IMMTMHFCKDEDGKAQVPFKTVYVTGLIRDENGDKMSK 557
            +P D +  G D    W   +  + TM F         V +K V   GL+ D+NG+KMSK
Sbjct: 661 VYPADFIAEGVDQTRGWFFTLHAIATMVF-------DSVSYKAVISNGLVLDKNGNKMSK 713

Query: 558 SKGNVLDPIDMIDGIDLESLVAKRTGNMMQPQLAAKIEKNTRKTFENGIEAYGTDSLRFT 617
              N +DP   I                                     E YG+D LR+ 
Sbjct: 714 RLNNAVDPFTTI-------------------------------------EKYGSDPLRWY 736

Query: 618 LAAMASTGRDINWDMKRLEGYRN-FCNKLWNASRYVLMNT-------EEQDCGFAAGAEL 669
           +   +S   ++ +D+  +E  R  F   L+N   +  +         +E D   A   E+
Sbjct: 737 MITNSSPWDNLKFDIDGIEEVRRKFFGTLYNTYSFFALYANVDGFEYKEADVPMAERPEI 796

Query: 670 EYSLADKWIESQFELAAKEFNGHIDNFRLDMAANTLYEFIWNQFCDWYLELTKPVLWKGT 729
                D+WI S      KE +   + +    A   + +F+ +   +WY+ L +   W G 
Sbjct: 797 -----DRWILSVLNTLIKEVDTCYNEYEPTKAGRLISDFVNDNLSNWYVRLNRKRFWGGE 851

Query: 730 EAQQR-ATRRTLITVLEKTLRLAHPVIPYITETIWQSVKPLVDGVEGDTIMLQALPQYDV 788
             Q + +  +TL T LE   +L  P+ P+  + ++  +          +I L   P+Y  
Sbjct: 852 FTQDKLSAYQTLYTCLETVAKLMAPISPFYADRLYTDLTTATGRDNVVSIHLAEFPKYQE 911

Query: 789 ANFNQEALDDIEWVKAFITSIRNLRAEYDINPGKPLE-VMLKAANEQDAARIEANKPVLV 847
              ++E    ++  +   + +  LR + +I   +PL+ +M+  A+E+  A IEA K +++
Sbjct: 912 EMIDKELEARMQMAQDVTSMVLALRRKVNIKVRQPLQCIMIPVADEEQKAHIEAVKALIM 971

Query: 848 SLAKLESIRVLADGEA 863
           +   ++ I+   DG A
Sbjct: 972 NEVNVKDIK-FVDGAA 986