Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., FIG000988: Predicted permease from Pseudomonas fluorescens FW300-N2E2

 Score =  236 bits (603), Expect = 6e-67
 Identities = 133/350 (38%), Positives = 207/350 (59%), Gaps = 8/350 (2%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           +I+ RYL RE + +  A+  VL ++ +S +FI+ LA A+ G +    +  I+G  +P   
Sbjct: 1   VIVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAASGALDPGSLFLIMGFRLPGFL 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
            L+LPL L++GILL +GRLY +SE+TV++ATG+  + L R  L+ A + A V A+ +L L
Sbjct: 61  QLILPLGLFLGILLAYGRLYLDSEMTVLSATGMSQQRLFRMTLFPATLVALVVAWLSLSL 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRK--LYNVFVAQL- 177
           AP   ++   L+ Q  A    D L  G FQ   DG+ V + + + + +  L  VF+ Q  
Sbjct: 121 APQGANQFQLLINQQDAMTEFDTLVPGRFQALRDGTRVTYTEQLSDDRIDLAGVFITQKN 180

Query: 178 ----APRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGL 233
                 +D  + SV+ +  G  +   DG + + L +G RY+G P + DY    +D+Y  L
Sbjct: 181 LSSDTKKDRGI-SVLVAEKGRQEINPDGNRYLILENGYRYDGKPGQADYRAIKYDTYGVL 239

Query: 234 IGQREVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQ 293
           + + EV     D +A+PT SLL N D RA+ ELQWR+SL + + ++T++ VPLS VNPRQ
Sbjct: 240 LPKPEVSDEVTDRDAMPTASLLGNKDIRARTELQWRLSLPLLVFIVTLMAVPLSRVNPRQ 299

Query: 294 GRFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAAL 343
           GRF K+ PAIL+Y+ Y   L + +SA+E G +P  +GLW +++  L   L
Sbjct: 300 GRFLKLLPAILLYMAYLTILISARSALEKGKIPPALGLWWVHSIFLAIGL 349