Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score =  229 bits (585), Expect = 7e-65
 Identities = 136/373 (36%), Positives = 220/373 (58%), Gaps = 9/373 (2%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           MI+ RYL RE + +  A+  VL ++ +S +FI+ LA A+ G +   ++L I+G  +P   
Sbjct: 1   MIVFRYLSRELLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLLLIMGFRLPGFL 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
            L+LPL L++GILL +GRLY ESE+TV++ATG+  + L+  ++  A + A++  + +L L
Sbjct: 61  QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSMAPAALVAAMVGWLSLGL 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI--ENRKLYNVFVAQL- 177
           AP    +   ++ Q  +    D L  G FQ    GS V +   +  +  +L  VF+++  
Sbjct: 121 APQGIAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETN 180

Query: 178 ----APRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGL 233
                 ++S L SV+ + SG  +   DG + + L +G RY+G P + DY    +D+Y  L
Sbjct: 181 VSRQTGKESGL-SVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVL 239

Query: 234 IGQREVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQ 293
           + + EV     + EA+PT  L+ + + R Q ELQWR+SL + + ++T+L VPL+ VNPRQ
Sbjct: 240 LPKPEVSMELSEREAMPTRELVGSDNVRHQTELQWRLSLPLLVFVVTVLAVPLAKVNPRQ 299

Query: 294 GRFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPV 353
           GRF K+ PAIL+Y+TY   L A + A++ G LP+ +GLW ++   L   L++   + I +
Sbjct: 300 GRFLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIGLLMLFWEPIRL 359

Query: 354 RRFKDRWKQRKVA 366
           R  K R  QR+VA
Sbjct: 360 RMSKRR-MQREVA 371