Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., conserved hypothetical protein YCF84 from Synechococcus elongatus PCC 7942

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 74/353 (20%), Positives = 151/353 (42%), Gaps = 28/353 (7%)

Query: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFI-RVLADASDGEIPTSMILSIVGLNMPAMG 60
           I+ RY++RE +            V LS   +  ++   ++  +P S+   +  L MP   
Sbjct: 29  IMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVRQVTEAGLPLSVAAQVFLLKMPDFL 88

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGN-KFLIRAALYLALITASVAAFNALW 119
           +L  P+S+ +  L+ + RL ++SE+  + + GI + +F++   L   ++T    AF    
Sbjct: 89  VLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFYES- 147

Query: 120 LAPWSQDKEAHLMEQFAAENSVDLLQKGHF------QRSPDGSSVVFIDNIENRKLYNVF 173
           + P +  +    ++    +    L +K +       +++ + + + +    +  ++  + 
Sbjct: 148 VVPAANFQAQVTLQTALNQTRPQLEEKNNIVYQQFDRKTSELARIFYARRYDGEQMRGLT 207

Query: 174 VAQLAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGL 233
           +      +  L  ++ + +G       G Q+    +GT Y   P      I  F S +  
Sbjct: 208 ILDFTRGE--LSQIISAETG---VWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKSQEFT 262

Query: 234 IGQR--EVKSAERD---------WEALPTLSLLNN-AD-RRAQAELQWRISL-VVCIPLL 279
           I +    + S  RD         W+ L  L   NN AD R+ +  LQ +++L  VC+   
Sbjct: 263 IPETPLSIASQSRDETQMNATQIWQYLRVLRQTNNTADIRKWEVRLQQKLALPFVCVAFG 322

Query: 280 TMLVVPLSAVNPRQGRFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
            +     +A N R GR    G ++LI  +Y+L    T +   +G+LP ++  W
Sbjct: 323 LIGASLGTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPTLLAGW 375