Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  283 bits (724), Expect = 5e-81
 Identities = 146/369 (39%), Positives = 232/369 (62%), Gaps = 3/369 (0%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           MI+ RYL +E  K+Q A+  VL  VF+SQ F+RVLADASDGE P S++++++GLN+P + 
Sbjct: 1   MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLA 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
           +L+LPLSL++GIL+  GR+YAE+E+ V +  G+   ++ R  L LA++      + +L++
Sbjct: 61  VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI-ENRKLYNVFVAQLAP 179
            PW+++++  ++E+  +E  +  L +G FQ SPDG +V+F++ I ++ +L  VFVAQL  
Sbjct: 121 TPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPD 180

Query: 180 RDSILPSV--MFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQR 237
            D     +  + +  G V E + G Q + L DG RY+G P  +DY +  F  Y   I ++
Sbjct: 181 PDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ 240

Query: 238 EVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFA 297
           EV    R   ALP   LL+     A AEL WRI++ + IPL+T++ VP++ VN RQG+FA
Sbjct: 241 EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFA 300

Query: 298 KMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRFK 357
           KM PAIL+YL YF  + A + A+ED  +P  +G+W I+ + L+  +M+   +     +  
Sbjct: 301 KMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLS 360

Query: 358 DRWKQRKVA 366
            R+K+R  A
Sbjct: 361 GRFKRRAAA 369