Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (740), Expect = 7e-83
 Identities = 148/369 (40%), Positives = 239/369 (64%), Gaps = 3/369 (0%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           MI+ RYLIRE +K+Q A+ FVL  +F+SQ F+R+LADASDGE P S+I +++GLN+P + 
Sbjct: 1   MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLV 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
           +L+LPLSL++GIL+  GR+YAE+E+ +++  G+   ++ R  L LA+I      + +L++
Sbjct: 61  VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI-ENRKLYNVFVAQLA- 178
           APW+++++  ++E+  +E  +  L +G FQ SP+G +V+F++ I ++ +L  VFVAQL  
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPD 180

Query: 179 PRDSI-LPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQR 237
           P D I L +V+ +  G V E  +G Q + L DG RY+G P + DY +  F  Y   I ++
Sbjct: 181 PNDEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ 240

Query: 238 EVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFA 297
           +V    R   ALP   LL      A AE  WR+++ + IP++T++ VPL+ VN RQG+FA
Sbjct: 241 QVDERRRKLSALPLGELLKIDGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFA 300

Query: 298 KMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRFK 357
           KM PA+L+YL YF  + A + A++DG +P+ +G+W I+ + L+  +++   D     R  
Sbjct: 301 KMLPAVLLYLGYFGLMVAGRKALQDGVIPLYLGMWWIHLSALIMGILLLGKDRPLFTRLS 360

Query: 358 DRWKQRKVA 366
               ++KVA
Sbjct: 361 AAMARKKVA 369