Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., permease YjgP/YjgQ family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  288 bits (738), Expect = 1e-82
 Identities = 147/369 (39%), Positives = 237/369 (64%), Gaps = 3/369 (0%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           MI+ RYLIRE +K+Q A+ FVL  +F+SQ F+R+LADASDGE P S+I +++GLN+P + 
Sbjct: 1   MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLV 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
           +L+LPLSL++GIL+  GR+YAE+E+ +++  G+   ++ R  L LA+I      + +L++
Sbjct: 61  VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI-ENRKLYNVFVAQLA- 178
           APW+++++  ++E+  +E  +  L +G FQ SP+G +V+F++ I ++  L  VFVAQL  
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPD 180

Query: 179 PRDSI-LPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQR 237
           P D I L +V+ +  G V E  +G Q + L DG RY+G P + DY +  F  Y   I ++
Sbjct: 181 PNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ 240

Query: 238 EVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFA 297
           +V    R   ALP   L+      A AE  WR+++ + IP++T++ VPL+ VN RQG+FA
Sbjct: 241 QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFA 300

Query: 298 KMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRFK 357
           KM PA+L+YL YF  + A + A++DG +P  +G+W I+ + L+  +++   D     R  
Sbjct: 301 KMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLS 360

Query: 358 DRWKQRKVA 366
               ++KVA
Sbjct: 361 TAMARKKVA 369