Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score =  240 bits (612), Expect = 5e-68
 Identities = 139/352 (39%), Positives = 203/352 (57%), Gaps = 6/352 (1%)

Query: 5   LDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEM 64
           LD YIG  +      VL   VGL+ +  ++++L  V +G Y L  AL +V+L+ PR +  
Sbjct: 4   LDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDV-QGGYGLGDALQYVLLTSPRRLYE 62

Query: 65  FFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAP 124
             PMAAL+G LIGLG LASSSEL +M+AAG S   I ++V+K  + L++   L+GE+ AP
Sbjct: 63  MLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVMAVMKPMLVLLVAGILIGEYVAP 122

Query: 125 QAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVE-NEHLYGLNLWRFDENKKL 183
             + +A+  R+ A   G   S + G+W R  N+F+ +  V+    L G+  +RFD+ ++L
Sbjct: 123 ATEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHVNAVQPGGVLVGVTRYRFDDERRL 182

Query: 184 STVIFSEQVDYVANNEWLMKDAVLTRLVND-IEISKESLPEYRWRTSLAPDKLAVVTVKP 242
               F+ +  Y  ++ W +++   T    D  E+ +   PE RW   L P  L  V ++P
Sbjct: 183 QASSFARRATYQGDH-WKLENISTTHFRGDHTEVLRA--PEERWDVQLTPQLLGTVVMEP 239

Query: 243 EELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMG 302
           E LS+TGL  Y+HYL     ++ RY LA W KV QP     ++L+A+SFIFGPLRSVT+G
Sbjct: 240 EALSITGLWRYIHYLGEQGLNNGRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSVTLG 299

Query: 303 ARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR 354
            RI +GV+ GF F I  +  GP S V+G  PL   + P+ V   I   LL R
Sbjct: 300 QRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPASVCALIGAWLLRR 351