Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., conserved hypothetical protein YCF84 from Synechococcus elongatus PCC 7942

 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 84/371 (22%), Positives = 156/371 (42%), Gaps = 32/371 (8%)

Query: 4   ILDWYIGRTIVATTALVLVTF--VGLS-GIIKYVEQLRKVGEGSYDLLQALLFVVLSIPR 60
           I+D YI R ++      +  F  VGLS G++   E +R+V E    L  A    +L +P 
Sbjct: 29  IMDRYILREMLGPFLFGVGAFTSVGLSIGVV--FELVRQVTEAGLPLSVAAQVFLLKMPD 86

Query: 61  DVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGE 120
            + + FPM+ LL AL+    L+S SEL+ +++ G S     L  +     LM IV     
Sbjct: 87  FLVLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGI-----LMSIVVTGMT 141

Query: 121 WGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIF---------IAKV------E 165
           +   ++   A + +A  T   A+   R  +   + N+ ++         +A++      +
Sbjct: 142 FAFYESVVPAANFQAQVTLQTALNQTRPQL--EEKNNIVYQQFDRKTSELARIFYARRYD 199

Query: 166 NEHLYGLNLWRFDENKKLSTVIFSEQ-VDYVANNEWLMKDAVLTRLVNDIEISK-ESLPE 223
            E + GL +  F    +LS +I +E  V +  +  W  ++  +  +  D   S   +   
Sbjct: 200 GEQMRGLTILDFTRG-ELSQIISAETGVWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKS 258

Query: 224 YRWRTSLAPDKLAVVTVKPEELSLTGLSDYVHYLKASEQ--DSSRYELALWRKVTQPISI 281
             +     P  +A  +    +++ T +  Y+  L+ +    D  ++E+ L +K+  P   
Sbjct: 259 QEFTIPETPLSIASQSRDETQMNATQIWQYLRVLRQTNNTADIRKWEVRLQQKLALPFVC 318

Query: 282 AVMMLMALSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPS 341
               L+  S    P +           V+  FS+Y+ +   G L +   LP L     P 
Sbjct: 319 VAFGLIGASLGTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPTLLAGWFPW 378

Query: 342 LVFLAIALGLL 352
           L+ + + L LL
Sbjct: 379 LLGMGVGLYLL 389