Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., permease YjgP/YjgQ family protein (RefSeq) from Shewanella loihica PV-4

 Score =  370 bits (950), Expect = e-107
 Identities = 183/353 (51%), Positives = 261/353 (73%), Gaps = 3/353 (0%)

Query: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62
           +ILD YI R +++T+AL L+   GLSGIIK+V+Q+R VG G+Y ++ A ++V+  IPRD+
Sbjct: 2   RILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVGRGTYTMVDAGIYVLFLIPRDI 61

Query: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122
           EMFFPMA LLGALIG+G LAS+SELVVMQ+AG S+  I LS +KTA+PLM++V  LGEWG
Sbjct: 62  EMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGEWG 121

Query: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVEN-EHLYGLNLWRFDENK 181
           AP A++  ++++A   SGG++     G+WA+D + F+ I ++E+   L+ + L+ FD+  
Sbjct: 122 APVAERHGKELQAVKLSGGSLFKSSRGIWAKDGDLFVNIGEIEDINSLHNIVLYEFDDKL 181

Query: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241
            L   I + +  Y + + W + D   T++  + ++S   L  YRW ++L PDKL+VV+VK
Sbjct: 182 NLVGTIEARRGVY-SKDHWRLLDVRQTKITPE-QVSLTDLTLYRWESTLTPDKLSVVSVK 239

Query: 242 PEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTM 301
           PE LS+ GL DY+ YL+ + QDS RYELALWRK+ QPI++AVMML+ALSF+FGPLR+VTM
Sbjct: 240 PEALSIQGLVDYLEYLRVNNQDSGRYELALWRKIMQPITVAVMMLVALSFVFGPLRTVTM 299

Query: 302 GARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR 354
           GAR+L GV+AGFSFYI +E FGP++LVYGLP + GA+ P L+F + A+  + R
Sbjct: 300 GARVLLGVVAGFSFYICNEIFGPMTLVYGLPAVLGAVMPPLIFSSAAIYYIRR 352