Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  380 bits (975), Expect = e-110
 Identities = 191/353 (54%), Positives = 263/353 (74%), Gaps = 3/353 (0%)

Query: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62
           KILD YI R +++T+AL L+   GLSGIIK+V+QLR VG G+Y ++ A ++V+  +PRD+
Sbjct: 2   KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLVPRDI 61

Query: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122
           EMFFPMA LLGALIG+G LAS+SELVVMQA+G S+L I LS +KTA+PLM++V  LGEWG
Sbjct: 62  EMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEWG 121

Query: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVEN-EHLYGLNLWRFDENK 181
           AP A++ A +++A   SGG+++    G+WA+D + F+ I +V + + L  + L++F+   
Sbjct: 122 APIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNSEL 181

Query: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241
           KL+ V+ +E   + + + WL+ D   T L  D E+  E L E  WR+SL PDKL+VV+VK
Sbjct: 182 KLTNVVHAESALF-SKDSWLLTDVKRTDLSYD-EVKLEHLDEDVWRSSLTPDKLSVVSVK 239

Query: 242 PEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTM 301
           PE LS+ GL  Y+ YL ++ QD SRYELALWRKV QP+++ VMML+ALSF+FGPLR+VTM
Sbjct: 240 PEALSIRGLMGYLEYLNSNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTVTM 299

Query: 302 GARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR 354
           GAR+L GV+AGFSFYIS+E FGP+S+VY LP   GA+APSL+F  +A   + R
Sbjct: 300 GARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFYFIRR 352