Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., permease YjgP/YjgQ family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  378 bits (970), Expect = e-109
 Identities = 192/353 (54%), Positives = 262/353 (74%), Gaps = 3/353 (0%)

Query: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62
           KILD YI R +++T+AL L+   GLSGIIK+V+QLR VG GSY ++ A ++V+  +PRD+
Sbjct: 2   KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGIYVLFLVPRDI 61

Query: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122
           EMFFPMA LLGALIG+G LAS+SELVVMQA+G S+L I LS +KTA+PLM++V  LGEWG
Sbjct: 62  EMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEWG 121

Query: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVEN-EHLYGLNLWRFDENK 181
           AP A++ A +++A   SGG+++    G+WA+D + F+ I +V + + L  + L++F+   
Sbjct: 122 APVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNSEL 181

Query: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241
           KL+ V+ ++   + + + W + D   T L  D E+  E L E  WR+SL PDKL+VV+VK
Sbjct: 182 KLTNVVHAKSALF-SKDSWHLMDVKRTDLSYD-EVKLEHLDEDIWRSSLTPDKLSVVSVK 239

Query: 242 PEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTM 301
           PE LS+ GL  Y+ YLK + QD SRYELALWRKV QP+++ VMML+ALSF+FGPLR+VTM
Sbjct: 240 PEALSIRGLMGYLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTVTM 299

Query: 302 GARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR 354
           GAR+L GV+AGFSFYIS+E FGP+S+VY LP   GA+APSL+F  IA   + R
Sbjct: 300 GARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352