Pairwise Alignments

Query, 160 a.a., RDD family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 169 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (311), Expect = 8e-34
 Identities = 63/158 (39%), Positives = 93/158 (58%)

Query: 1   MIMMNYATLPPAGFFRRLGAWIYDALIVMAILMMAGGVVVAVLEALVAAGLMSYAPYQDA 60
           M+   +A  P AGFFRRLGA IYD L+ +A+ M +G +   +   L   GL+S   ++  
Sbjct: 1   MLNAEHANFPRAGFFRRLGAIIYDLLLAVAVYMFSGAIGFGIFFGLTTTGLVSMNGFEHV 60

Query: 61  SDLLSSHPIWSPVYTVYLALVWIYFFVYFWTRGGQTLGMRAWKMHICTEEGHHISATQAL 120
           SD L+  PI+  +Y ++LAL    F+  FW++GGQTLGMRAW++ I    G ++S   A 
Sbjct: 61  SDALNGTPIYHGIYQLWLALCVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAY 120

Query: 121 IRLATSGFGLANLTVLFDTKKRGFHDIWAKTKVVVLPK 158
            R+  S  G+ NL VL +  K    D+  +++VVVL K
Sbjct: 121 ARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSK 158