Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., HD-GYP domain from Pseudomonas stutzeri RCH2

 Score =  116 bits (290), Expect = 1e-30
 Identities = 98/380 (25%), Positives = 173/380 (45%), Gaps = 22/380 (5%)

Query: 5   KITVDRLQPGLYI-RLPVKWNEHPFLFNSFKIKSQEQIQLIKHLGIQHVFLNPGLSDSQP 63
           ++ V  L+ G+Y+  L   W+E  F F  F + +  +I+ ++     +V+++        
Sbjct: 21  RVAVASLELGMYVCELDRPWSETNFAFQGFPLLTPGEIRKVRSC-CDYVYVDDTRRVRLQ 79

Query: 64  LPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEFERSLARMRAVV 123
               V  ATP    P      E+ +    T +E   E R   Q   +  E+ LA ++   
Sbjct: 80  HGVPVATATPRARKPQ-----ERTYHALSTEVE---EARSAYQDGSQLIEQVLADVQ--- 128

Query: 124 NKIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIY--FHSLNVSVIAMM 181
                R +D        V   ++ +L +++  L L+  K++  D+Y   H L+VS++AM 
Sbjct: 129 ---HGRVIDTRA-CHGAVKRNLESMLRNESAMLWLIRLKNK--DLYTSLHCLSVSIMAMG 182

Query: 182 IGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLHTKYGIELAD 241
            G   GL  ++++ L  A L HD+GK+R+   I+ K   LT  E   ++ H  +G+E   
Sbjct: 183 FGNHLGLQDDKLQLLGMAGLLHDVGKMRIDPQILNKPGKLTSQEFEVIKRHPVFGLEALR 242

Query: 242 NIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLCHPNIPSEQK 301
                PE+A      HHE  DG+GYPLG     I  + +I+ + +AFD +         +
Sbjct: 243 AQPGVPEAALHAAYGHHERLDGTGYPLGSGPAQISYMTRIITIVDAFDAITSHRAYDCAR 302

Query: 302 IPYVALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISVNASSLLYPN 361
               A   L       ++ + +   ++++G FP GT+V+L    V +V+  +    L P 
Sbjct: 303 PVQAAFEILRSGSGRQFDEDLVLEFIRWLGAFPVGTLVELHTGEVAVVVEKHKQFQLRPR 362

Query: 362 VLIY-DPSVPRSQAPIIDLA 380
           V++  D +  R  A  +DLA
Sbjct: 363 VVVLRDAAKQRCAARYLDLA 382