Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., HD domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (314), Expect = 2e-33
 Identities = 97/404 (24%), Positives = 188/404 (46%), Gaps = 40/404 (9%)

Query: 4   IKITVDRLQPGLYIRLPVKWNEHPF-LFNSFKIKSQEQIQLIKHLGIQHVFLNPGLSDSQ 62
           IK+ V +L  G+++    K ++    + N+ +IK ++ I  +   GI++V+         
Sbjct: 11  IKLPVSKLTLGMFVSAIDKNDQGRLAIANAGQIKHKDAILKLTKNGIKYVW--------- 61

Query: 63  PLPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEFERS---LARM 119
                            VD+E        + ++   ++ ++ + T EK+ E++   L   
Sbjct: 62  -----------------VDTERSAEHCGFKRKVSNDSQVKKSIVTREKQQEQAQVILTEA 104

Query: 120 RAVVNKIRNRPLDAVGEAI------ILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHSL 173
           + ++ K+ +   +  G+AI       L D +++ +L D++    +   +++   +  HS+
Sbjct: 105 KDLIRKVLSETFE--GKAIEVAPFEALADSMIESVLLDEDALKCMSALRTKDAYLLEHSV 162

Query: 174 NVSVIAMMIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLHT 233
           NV+ + +  GK   L    ++E+A   + HDIGK++V   ++ K   LT  E  +++LH 
Sbjct: 163 NVAFLLVTFGKYLKLDRSMLREMAVGGILHDIGKIKVDNKVLHKPGKLTPEEFEHMKLHQ 222

Query: 234 KYGIELADNIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLCH 293
            Y +E+    +   + +K V   HHE  DG GYP GLKGD+I    ++  + + FD L  
Sbjct: 223 VYALEIMSETKGLSQISKDVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTA 282

Query: 294 PNIPSEQKIPYVALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISVN 353
                E   P  A   L        + + +   ++ +GV+P G++V+LS+  VG+V +  
Sbjct: 283 TRCYKEAMSPAAAFKILLSLTPFHLDQQLVYDFIRCIGVYPVGSLVELSDGRVGIVWASK 342

Query: 354 ASSLLYPNV-LIYDPSVPR-SQAPIIDLADRDLKIVNAILPNKL 395
               L+P V   Y     R ++  I+DL   +L I   + P+ L
Sbjct: 343 DRDALHPIVKCFYSLKAKRYTEVVIVDLLKSELHIERGVSPSSL 386