Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., HDIG domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.9 bits (167), Expect = 3e-16
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 17/159 (10%)

Query: 158 LMNSKSEFEDIYFHSLNVSVIAMMIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRK 217
           ++++KS F   + HS  V+++A ++ K  G+     + L  A L HD+GK++ P  ++ K
Sbjct: 239 IVDAKSPFT--FHHSEKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHK 296

Query: 218 KTPLTEPEENYLRLHTKYGIELADNIET-FPESA-KRVIEQHHELRDGSGYPLGLKGDDI 275
           +  LT+ E + ++ HT   ++    +   FP+S        HHE  DGSGYP   + + +
Sbjct: 297 EGKLTKEEYSIVKRHT---VDTEHTLHRFFPKSVIGEWASNHHERLDGSGYPFSKRQEQL 353

Query: 276 DELAQIVAVANAFDNLCHPNIPSEQKIPY---VALSHLF 311
           D  ++I+AV + F  L        QK PY   ++LS ++
Sbjct: 354 DLPSRILAVVDVFQAL-------TQKRPYRGSLSLSEIY 385



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 167 DIYFHSLNVSVIAMMIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEE 226
           D   H   V+ +A       G P E+ +   FA L HD G       +  +   L +PE+
Sbjct: 32  DDLHHGHRVAYMAYECASVLGWPDEKKQFAYFAGLIHDCGVSSSEEHL--RLLKLMQPED 89

Query: 227 NYLRLHTKYGIELADNIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVAN 286
            +   H+K G E           A  V+  H    +   + L +   DI   A ++ +A+
Sbjct: 90  AH--CHSKRGYEALLECPILDVFAPIVLYHHTPWLELQSHDLSVFERDI---AALIFLAD 144

Query: 287 AFDNL-------CHPNIPSEQKIPYVALSHLFKNCKHIYNAENLGILVKFM 330
             D L       CH  + +  +   +   +L  +C  ++  E +  + + +
Sbjct: 145 RTDFLRARYTHGCHEELITLHE--SMVAENLLAHCGTLFEPEMVNAMCQLV 193