Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., HDIG domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  226 bits (577), Expect = 7e-64
 Identities = 137/416 (32%), Positives = 222/416 (53%), Gaps = 22/416 (5%)

Query: 1   MASIKITVDRLQPGLYIRLPVKWNEHPFLFNSFKIKSQEQIQLIKHLGIQHVFLNPGLSD 60
           +A  K+ +  LQPG+ ++LP+ W  HPFLFN   I S  QI++I+ LG+  V+L  G SD
Sbjct: 4   VAHKKLLLSELQPGMRVKLPLSWTNHPFLFNRVDINSAAQIEMIRGLGVPFVYLISGSSD 63

Query: 61  SQPLPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEFERSLARMR 120
                   EE    + +PP          E+  + +     R+ ++  +K F  S+ + R
Sbjct: 64  DAEAVDEEEEIEEIDEMPP----------ERDLKADT----RKSMRLSQKRFLESVNQCR 109

Query: 121 AVVNKIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHSLNVSVIAM 180
            V  KI + P  A   +  LV+D++  L       L L+    +   +  H ++V+V+AM
Sbjct: 110 NVFGKIVSDPEGAYRLSAALVEDLLSHLQEVQKPFLTLVGMDEKDVSVTQHGVSVAVLAM 169

Query: 181 MIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLHTKYGIELA 240
           MIG A  LPA  ++++A  +LFHDIGK++VP  I RK++ LT  E NYL++H  +G ++ 
Sbjct: 170 MIGHALDLPARELRDIALGSLFHDIGKLKVPDVIRRKRSALTPHEANYLQMHPNFGYDML 229

Query: 241 DNIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLCHPNIPSEQ 300
           +    FP+    ++  HHE  DGSG+P GL G  I  + QIV++AN +D      +  +Q
Sbjct: 230 NRSGLFPKEVLNIVLHHHEFVDGSGFPDGLTGHKIPMVTQIVSLANDYDQ----QLSGQQ 285

Query: 301 KI-PYVALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISVNASSLLY 359
              P VAL +LFKN    ++   + +LVK +G++PPGT+V+LS+D V  VI +    +  
Sbjct: 286 ATSPQVALGYLFKNRASKHSESLISVLVKILGIYPPGTIVKLSDDNVAKVI-MTTKEVSQ 344

Query: 360 PNVLIYDPSVPRSQAPIIDLADRDLKIVNAILPNKLPDKVRDYLNPRSRISYFFDS 415
           P V  +      S+A +  L+D  + +  ++    L +  +  L     IS++F S
Sbjct: 345 PQV--WACKEDGSEASLRFLSDEGVTVQKSLRVEDLTEGAKRTLQVDKGISFYFSS 398