Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., HDIG domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  372 bits (954), Expect = e-107
 Identities = 180/414 (43%), Positives = 271/414 (65%)

Query: 3   SIKITVDRLQPGLYIRLPVKWNEHPFLFNSFKIKSQEQIQLIKHLGIQHVFLNPGLSDSQ 62
           S K++V +LQ G ++RLPV W +HPFLF+SF IK   QI+LIK+LGI+HV ++   S+  
Sbjct: 4   SCKVSVHQLQVGNFVRLPVAWKDHPFLFSSFHIKQAAQIELIKNLGIEHVIVDLERSEIA 63

Query: 63  PLPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEFERSLARMRAV 122
           PL P           P +      +   K  +IE   + RR +   E+ F RS+A MR++
Sbjct: 64  PLNPEAVNPITLPPSPELHDLKNNMDIYKAEQIEVQKKLRRDIHKTEQNFTRSVAMMRSL 123

Query: 123 VNKIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHSLNVSVIAMMI 182
           ++K+RNRPL+AV +A +LV  +V++LL+ DN+ LHLM+   + E IY+HSLNVS+++M+I
Sbjct: 124 ISKLRNRPLNAVDDAKVLVQSMVEQLLTSDNLVLHLMSDAKQDESIYYHSLNVSILSMLI 183

Query: 183 GKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLHTKYGIELADN 242
            K        I+ +  +ALFHD+GK++VP  I++K TP + PE N+++ H   GI+L   
Sbjct: 184 AKEMEWDRSEIELVGLSALFHDVGKLKVPPQILKKTTPWSAPELNFIKQHPLLGIDLLKL 243

Query: 243 IETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLCHPNIPSEQKI 302
            + FPE+A   I  HHE  DGSGYP GLK  D+D+++Q++AV N +D+LC+P+   + ++
Sbjct: 244 ADNFPEAALPAIINHHEFLDGSGYPKGLKEADLDKISQLLAVVNEYDSLCYPSNQGKARM 303

Query: 303 PYVALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISVNASSLLYPNV 362
           PY AL HL+K  K   N E +G ++K +G++PPG+VV+LS+    +V+SVN   LL P +
Sbjct: 304 PYAALGHLYKQYKTKLNQEYIGKMIKMLGIYPPGSVVELSSGQYAMVMSVNLQKLLCPKI 363

Query: 363 LIYDPSVPRSQAPIIDLADRDLKIVNAILPNKLPDKVRDYLNPRSRISYFFDSE 416
           L+YD  VP+ QAPI+DL    + IV  +    LP+KV +YLNPR R+SY+F  +
Sbjct: 364 LVYDALVPKDQAPIVDLEVEGISIVRCLPAAALPEKVHEYLNPRERVSYYFGGD 417