Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., HDIG domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  140 bits (354), Expect = 5e-38
 Identities = 99/389 (25%), Positives = 187/389 (48%), Gaps = 31/389 (7%)

Query: 5   KITVDRLQPGLYI-RLPVKWNEHPFLF-NSFKIKSQEQIQLIKHLGIQHVFLNP------ 56
           KI    L+PG+++    + W E+P+L+ +   + S+  ++ I+  G   VF++       
Sbjct: 4   KIGTVELKPGMFVVDTGISWLENPYLYAHEGLVGSESDVRRIRDEGYLEVFIDTRRSLFG 63

Query: 57  ----GLSDSQPLPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEF 112
               G+SD + L  ++++      L P    AE++   K T +                +
Sbjct: 64  RDPDGVSDEEILSGALQQLEDPGVLEPQVPVAEEM--RKATVL----------------Y 105

Query: 113 ERSLARMRAVVNKIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHS 172
           + ++   R +++++R++ +  + EA  LVD ++  +  + N  + L   ++  E  Y H 
Sbjct: 106 DTTVRYARGIMDEMRDKGVVDMSEAEPLVDSMLGSITRNTNALVGLAKLRNVDEYTYTHC 165

Query: 173 LNVSVIAMMIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLH 232
           +NV +++M+ G+  G     +  L  A LFHD+GK R+P  I++    L+  E   ++ H
Sbjct: 166 INVGLLSMVFGRHLGFGPVTLARLGLAGLFHDLGKARIPDDILKSPRRLSPDEFEVMKGH 225

Query: 233 TKYGIELADNIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLC 292
              G E        PE     + +HHE  +G GYP GL+G+ I    +I+AV + +D L 
Sbjct: 226 PGIGFEYMRERGGVPEEVLEGVYEHHEKHNGLGYPRGLRGEQISVAGRILAVVDVYDALT 285

Query: 293 HPNIPSEQKIPYVALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISV 352
              +  E  +P+ ALS ++      ++   +   ++ +G++P G+VV+L+     +V   
Sbjct: 286 SRRVYKEPMLPHKALSLMYGMRGQDFSPGLVERFIRCLGIYPVGSVVELNTGQRCVVSEA 345

Query: 353 NASSLLYPNVLIYDPSVPRSQAP-IIDLA 380
           N  + L P VLI   S  R  +P  +DLA
Sbjct: 346 NLRNPLQPRVLIVHDSKGRPCSPRPLDLA 374