Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains from Paraburkholderia bryophila 376MFSha3.1

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 24/234 (10%)

Query: 60  DSQPLPPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLN-EYRRRVQTCEKEFERSLAR 118
           D Q L  +V+ A  + AL         L QE+  ++   N E  R V    +E  +++  
Sbjct: 133 DDQDLLLTVQRALEQLALQRKAERLTLLLQEQNDKLSSFNMELEREVHARTEEIRQTVMF 192

Query: 119 MRAVVNKIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHSLNVSVI 178
           +    + +++  L  V                   V  +++  +        HS  +   
Sbjct: 193 LEGAEHDLKSNFLTMV------------------KVCANMVEMRCGLPG---HSARIGET 231

Query: 179 AMMIGKARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYL-RLHTKYGI 237
           A  IG A GL      EL  A L H IGK+ +P A+++      +P+E  L +LH  +G 
Sbjct: 232 ARQIGAALGLSDYACNELLMAGLLHGIGKLFLPDALLKTPIAKLQPQEAKLYQLHPLHG- 290

Query: 238 ELADNIETFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNL 291
           ++A    +   + + +I   +E  DG G P GL G  I   A+++A+A   ++L
Sbjct: 291 QMALTPVSQLSTVQTMIRHQYERYDGRGTPDGLVGGLIPLGARVLALARDAEDL 344