Pairwise Alignments

Query, 467 a.a., 3-isopropylmalate dehydratase large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  201 bits (511), Expect = 4e-56
 Identities = 150/468 (32%), Positives = 216/468 (46%), Gaps = 62/468 (13%)

Query: 4   AKTLYEKIYDAHV--VVAAPGETPILYIDRHLVHEVTSPQAFDGLREKG-RPVRQVSKTF 60
           A TL +KI   H    +   G+     +   L +++T+P A    R  G + V    +  
Sbjct: 2   AHTLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAKRVFDKDRVA 61

Query: 61  ATMDHNVSTTTKDINASGEMARIQMQTLSKNCEEFGVTLYDINHKYQG----IVHVMGPE 116
             MDH   T  KDI A+      Q++   +   E GVT     H Y+G    + H + PE
Sbjct: 62  LVMDH--FTPQKDIEAAQ-----QVKLTREFAREMGVT-----HYYEGGDCGVEHALLPE 109

Query: 117 LGITLPGMTIVCGDSHTATHGAFGSLAFGIGTSEVEHVLATQTLKQGRAKTMKIEVRGKV 176
           LG+  PG  +V  DSHT T+G  G+ A G+G+++V   +A          T++    G +
Sbjct: 110 LGLVGPGDVVVGADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTL 169

Query: 177 APGITAKDIVLAIIGKTTAAGGTGYVVEFCGEAIRDLSMEGRMTVCNMAIELGAKAGLIA 236
              + AKD++L +IG     G     +EF G AI  L +EGRMT+ NMAIE G KAGL A
Sbjct: 170 PAYVGAKDLILTLIGAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGKAGLFA 229

Query: 237 PDATTFNYIKGRKFAPQGSDWDAAVDYWQTLKTDEDAQFDAVVTLEASEIKPQVTWGTNP 296
            DA T  Y         G   D A         D  A ++  ++ + + + P V     P
Sbjct: 230 ADAKTLTYC-----TTAGRTGDTA------FSADAGAVYERELSFDVTGMTPVVACPHLP 278

Query: 297 GQVIAVDEPIPSPSQFADPVERSSAEKALAYMGLEAGKMLSDYKVDKVFVGSCTNSRIED 356
             V  V E                               + D  V +V +GSCTN RI D
Sbjct: 279 DNVKPVSE-------------------------------VKDVTVQQVVIGSCTNGRIGD 307

Query: 357 MRAAAAVAKGKKVASHVQALIVPGSEQVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMN 416
           +R AAAV +G+KV+  V+ +++P +  +  QA  EGL + F+EAG       C  CL  +
Sbjct: 308 LREAAAVLRGRKVSRDVRCIVLPATPGIWRQALREGLIETFMEAGCIVGPATCGPCLGGH 367

Query: 417 NDRLGPGERCASTSNRNFEGRQGR-DGRTHLVSPAMAAAAAIAGHFVD 463
              L  GER  +T+NRNF+GR G  +   +L  PA AAA+A+ G   D
Sbjct: 368 MGILADGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITD 415