Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II from Pseudomonas stutzeri RCH2

 Score =  105 bits (261), Expect = 7e-27
 Identities = 131/505 (25%), Positives = 196/505 (38%), Gaps = 113/505 (22%)

Query: 61  DKIAIFSNNMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFV----GEQ 116
           D+IAI   N+ ++ IA F AL+   + V   P  T  +  +  Q++  + +      G  
Sbjct: 76  DRIAIQMPNLLQYPIAVFGALRAGLIVVNTNPLYTSREMRHQFQDSGARALVYLNTFGHN 135

Query: 117 AQF---DAALSQF------EQCPELRLIVAMNANIDLKQASCAMHWDEFVA--------Q 159
            Q    D A+         +  P L+ ++   A   LK+        + ++         
Sbjct: 136 VQEVLPDTAIEHLIEVRIGDMLPPLKGVLVNAAVKHLKKMVPDYSLPQAISFKDVLRDGA 195

Query: 160 SHHQDRAPLDALIEQANYDDLFTLIYTSGTTGTPKGVMLDYRNIGA----------QLEG 209
            H+   APL+        D +  L YT GTTG  KG ML + N+ A          QL+ 
Sbjct: 196 RHNHKPAPLEL-------DHVAVLQYTGGTTGVAKGAMLTHGNLVANMQQVRANMQQLDE 248

Query: 210 HDQRLNLTQEDVSLCFLPLSHVFERAWTAYVLYKGATNCYLQDVAHVREALAEVRPTVMC 269
           H   +    ++V +  LPL H+          Y    NC    V             V+ 
Sbjct: 249 HGHPIIREGQEVMIAPLPLYHI----------YAFTVNCMCMVVTG--------NHNVLI 290

Query: 270 AVPRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCRQQQRQPSWMLKQSHQFAD 329
             PR        +      A L    LF       A MA                H    
Sbjct: 291 TNPRDINGFVKELQRWQFSAFLGLNTLFV------ALMA----------------HPQFK 328

Query: 330 KLVLSKLRALLGGRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVSCWDDHC 389
           K+  S+L+    G       G A +     R+    G  V  GYG+TET+  V      C
Sbjct: 329 KIDFSRLKGTNSG-------GTALVSAVAERWKSMTGCTVVEGYGLTETSPVV------C 375

Query: 390 FNPD-------SIGLSMPGAQVKI----------GENNEILVRGPMVMRGYYKLDKETTE 432
            NP        ++GL +PG  VK+          GE  E+ V+GP VM+GY++    T E
Sbjct: 376 ANPHGEHSRLGTVGLPVPGTTVKVIDDEGNALPLGERGELCVKGPQVMKGYWQRPDATAE 435

Query: 433 SFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIAV 492
             DE+G+LKTGD   IDE+G + I DR K+L+  SG   + P  IE  +     +   A 
Sbjct: 436 VLDEEGWLKTGDIAVIDEDGFVSIVDRKKDLIIVSGFN-VYPNEIEDVVMAHPKVAACAA 494

Query: 493 I--ADTR--KFVSALIVPCFDSLEE 513
           I  AD +  + V   +VP   +L++
Sbjct: 495 IGVADEKSGEAVKLFVVPSDPTLDQ 519