Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  208 bits (529), Expect = 5e-58
 Identities = 156/597 (26%), Positives = 272/597 (45%), Gaps = 80/597 (13%)

Query: 9   VKRIRQRIAQGGDNAALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSN 68
           V+ +   +   GD   L+   NGQ++  +W     Q+++++ +L   G+   DK+A+ S 
Sbjct: 9   VEMLDHWVQNQGDKVYLRQPVNGQYRDFSWRDVKRQMEQIAGSLRHLGLVPGDKVAVLSK 68

Query: 69  NMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGE---QAQFDAALSQ 125
           N   W I D A +    ++VPIYPT   +   Y+L+++  K +F+G+    A+ +A +  
Sbjct: 69  NCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSGAKAIFIGKLDHWAEQEAGVG- 127

Query: 126 FEQCPELRLIVAMNANIDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIY 185
                    I+ M+   D         WD+ +        APL A+      +D  TLIY
Sbjct: 128 -------GSILRMSFPYDTMPTQYG--WDQLMTMGQPLTDAPLPAM------EDTMTLIY 172

Query: 186 TSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFER-AWTAYVLYKG 244
           TSG+TG+PKG +  + +         + L    +D  L +LPL+H+ ER A      Y G
Sbjct: 173 TSGSTGSPKGAIQTFGSYCWTCTAVVRDLKTDGDDRLLSYLPLAHITERVAIEGSSFYSG 232

Query: 245 ATNCYLQDVAHVREALAEVRPTVMCAVPRFYEKIFSAIHEKV--------VKAPLVRKVL 296
           +   +++ +      +  +RPTV  +VPR +      I +KV        +K PL+   L
Sbjct: 233 SAVAFVESLDTFVADVQRMRPTVFFSVPRLWTLFQKNIIDKVGFDKLNFLLKLPLI-SYL 291

Query: 297 FTWAVNMGAKMAVCRQQQRQPSWMLKQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDE 356
               ++ G  +  CR                           LLG        G A +  
Sbjct: 292 VKRKIHKGLGLDKCR---------------------------LLGS-------GSAPIPP 317

Query: 357 TIGRFFHAIGINVKLGYGMTETTA-TVSCWDDHCFNPDSIGLSMPGAQVKIGENNEILVR 415
           ++ +++H+IG+N+   +GMTE  A ++  +        ++G  + G  V+  E+ E++V+
Sbjct: 318 SLIQWYHSIGLNICEAWGMTENCAYSIINYPFDASKIGTVGKPVEGCLVRRSESGELMVK 377

Query: 416 GPMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQ 475
            P +M GYY+  + +  +FDE GF  TGD   IDE+G + IT R+K+  KT+ GKY+AP 
Sbjct: 378 SPGLMSGYYQQPEASAAAFDEDGFFHTGDLCAIDEDGCVSITGRVKDNFKTAKGKYVAPV 437

Query: 476 VIEGAIGKDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVL 535
            IE  + +D  +E I VI        AL                ++  D   L    +V 
Sbjct: 438 PIERKLAQDPHVELICVIGSGLPHPIAL----------------VQLSDGATLQAREEVR 481

Query: 536 EMFEKRVNELQKELAKFEQVKKFRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIE 592
              +  ++ +   L   E V    ++   +++++  LTPT K++R V+  RY  +++
Sbjct: 482 ASIKATLDAVNPHLESHETVDAVVVVNAPWTIENDVLTPTLKIKRHVLEARYSAKVD 538