Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  292 bits (747), Expect = 3e-83
 Identities = 190/584 (32%), Positives = 301/584 (51%), Gaps = 18/584 (3%)

Query: 20  GDNAALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTIADFA 79
           G+   L  K  G +   +W    +Q+  L+ A++ QG+   D++ + S N P WTIAD A
Sbjct: 29  GERPFLWSKSEGGYAPWSWASVHDQVIALANAMIDQGLAPGDRVVLASENRPDWTIADLA 88

Query: 80  ALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFDAALSQFEQCPELRLIVAMN 139
            L   A+ VP Y T+T     ++L N +  +  V      +  L    +     L+V M+
Sbjct: 89  ILAAGAIPVPAYATHTEADHLHVLDNVEAAMAIVSTPLVAERFLRAAARAKRRPLVVMMD 148

Query: 140 AN--IDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIYTSGTTGTPKGVM 197
            +  + +      + W+  +A+   +    + A++ +   DDL ++I+TSGT GTPKGVM
Sbjct: 149 FDDAVVVPAGLTVLAWNAMMAEGEGRG---VPAVVHRIQTDDLASIIHTSGTGGTPKGVM 205

Query: 198 LDYRNIGAQLEGHDQRLNLT--QEDVSLCFLPLSHVFERAWTAYVLYKGATNCYLQDVAH 255
           L +R+I     G  + L     +E+V L FLPL H +E     +         Y  + A 
Sbjct: 206 LAHRSILHNCHGAFKLLETIGLEEEVFLSFLPLCHSYEHTTGLFFPISLGAQVYFAEGAE 265

Query: 256 VREA-LAEVRPTVMCAVPRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCRQQQ 314
              A + E +PT+M AVPR YE + + I   V K   +++ +F  AV++G      R++ 
Sbjct: 266 TLAANMVEAKPTIMTAVPRLYEMMRARILRAVEKEGGLKEKMFREAVDLG------RRRM 319

Query: 315 RQPSWML---KQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDETIGRFFHAIGINVKL 371
             P+ +    K +    DKLV   ++A  GGR+  M  GG  L+  +G FF A+GI V  
Sbjct: 320 DDPASLGVKDKLTDAALDKLVRHAVKARFGGRLKAMISGGGPLNPDVGYFFRALGIPVLQ 379

Query: 372 GYGMTETTATVSCWDDHCFNPDSIGLSMPGAQVKIGENNEILVRGPMVMRGYYKLDKETT 431
           GYG+TET   VSC        +++G ++ G  ++I  + EILV+GP+VM GY+   + T 
Sbjct: 380 GYGLTETAPVVSCNMPKKVKMNTVGPALYGVDIRIASDGEILVKGPLVMDGYWNDPESTR 439

Query: 432 ESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIA 491
              D  G+L TGD G +DE+G + ITDR K+L+  SGG  I+PQ +EG +G +  I    
Sbjct: 440 AVLDPDGWLHTGDVGTLDEDGFIQITDRKKDLIVNSGGHNISPQRVEGILGLEPEIGVGV 499

Query: 492 VIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRVNELQKELAK 551
           V  D    + ALIVP  + L  ++KE   K  D   + + + + +   K V     +L  
Sbjct: 500 VFGDRMPHLVALIVPEKEFLARWSKETG-KPADLALVYEDADLRQAIGKAVERANAKLGT 558

Query: 552 FEQVKKFRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIEEMY 595
            E+++KF LLP+  S+++ +LT + K RR V+ DRY   I  +Y
Sbjct: 559 VEKIRKFALLPEPMSVENDQLTHSMKARRHVLRDRYGALIAGLY 602