Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  605 bits (1559), Expect = e-177
 Identities = 312/597 (52%), Positives = 407/597 (68%), Gaps = 3/597 (0%)

Query: 1   MTNLDFHIVKRIRQRIAQGGDNAALK-HKQNGQWQAINWHQFGEQLDELSMALLAQGIGV 59
           M+   +H +  ++ +  Q GD  AL+ +  +  WQ I+W +F E  D+++ AL+A G   
Sbjct: 1   MSLQQYHPISLMQAQSQQRGDAIALEGYGLSAPWQQISWRRFDEIGDQIAKALIASGFAA 60

Query: 60  QDKIAIFSNNMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQF 119
           QDK+AI S N P+WT AD   L+ +AV VPIYPT+T EQA YI+ +A  K++FVG+  Q+
Sbjct: 61  QDKVAILSQNCPQWTCADVGVLKAKAVVVPIYPTSTLEQARYIIDDAQAKLIFVGDAEQY 120

Query: 120 DAALSQFEQCPELRLIVAMNANIDLKQASCAMHWDEFVAQSHHQD-RAPLDALIEQANYD 178
             A      CP L  IV  +A + LKQ   A+H+D  + Q+H  +  A L   +     D
Sbjct: 121 RMARELLAICPSLTQIVVFDAEVALKQEDTAVHFDSLLTQTHSPEVDAELAHRLANLALD 180

Query: 179 DLFTLIYTSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFERAWTA 238
           DL TLIYTSGTTG PKGVMLDYRNI + +  HD  L  T  DVSL FLPLSHVFER W+ 
Sbjct: 181 DLLTLIYTSGTTGDPKGVMLDYRNIASVIRQHDTILPFTPGDVSLAFLPLSHVFERGWSF 240

Query: 239 YVLYKGATNCYLQDVAHVREALAEVRPTVMCAVPRFYEKIFSAIHEKVVKAPLVRKVLFT 298
           YVL +G  N YL+D   V+EA+ ++RP  +C VPRF EK++SA+ +KV KAP  RK LF 
Sbjct: 241 YVLCRGGHNVYLKDPMTVKEAIVDIRPHTLCVVPRFLEKVYSAVQDKVNKAPDTRKKLFA 300

Query: 299 WAVNMGAKMAVCRQQQRQPSWMLKQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDETI 358
           WA+++G +     Q + + SW LK   + A KLV SKL+ +LGGR+ FMPCGGA LD+ +
Sbjct: 301 WAMSVGERQFEVSQGRAKASWWLKTQWKLAHKLVYSKLQQVLGGRLKFMPCGGAALDQNV 360

Query: 359 GRFFHAIGINVKLGYGMTETTATVSCWDDHCFNPDSIGLSMPGAQVKIGENNEILVRGPM 418
             FFH I I V  GYGMTETTATV+C         S G ++P  ++K+G++NEILVRG  
Sbjct: 361 ASFFHGIDIPVLCGYGMTETTATVTCNTLDNRVAGSNGKTLPEVEIKLGKDNEILVRGDT 420

Query: 419 VMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIE 478
           VMRGYY   +ET +SF E G+LKTGDAG IDE GNLFITDRIKELMKTS GKYIAPQ +E
Sbjct: 421 VMRGYYNRPQETADSF-EDGWLKTGDAGQIDEQGNLFITDRIKELMKTSNGKYIAPQRVE 479

Query: 479 GAIGKDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMF 538
           G +G   FIEQ+AVIAD + +V+ALIVP F+SLE +A+E  + Y   +EL++HS V+E F
Sbjct: 480 GKVGCCPFIEQVAVIADAKNYVTALIVPAFESLEAWAEEKGLHYESPMELLRHSHVIEHF 539

Query: 539 EKRVNELQKELAKFEQVKKFRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIEEMY 595
           E+R+  LQ+ELA FE++KKF LLP+AFSM++G LTPT KLRRK+I  +Y  EI  MY
Sbjct: 540 EQRLKHLQQELAGFEKIKKFTLLPEAFSMEAGLLTPTMKLRRKMIYHKYATEINAMY 596